[Crac-bugs] Build failed in Jenkins: crac-dev » --disable-shared,crac-fedora64 #26

ci-crac at inria.fr ci-crac at inria.fr
Sam 4 Mai 02:03:41 CEST 2013


See <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/26/>

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g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT chrPosition.o -MD -MP -MF .deps/chrPosition.Tpo -c -o chrPosition.o ../../../src/libSSA/chrPosition.cpp
mv -f .deps/chrPosition.Tpo .deps/chrPosition.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT HuffAlphabetRank.o -MD -MP -MF .deps/HuffAlphabetRank.Tpo -c -o HuffAlphabetRank.o ../../../src/libSSA/HuffAlphabetRank.cpp
mv -f .deps/HuffAlphabetRank.Tpo .deps/HuffAlphabetRank.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT Huffman_Codes.o -MD -MP -MF .deps/Huffman_Codes.Tpo -c -o Huffman_Codes.o ../../../src/libSSA/Huffman_Codes.cpp
mv -f .deps/Huffman_Codes.Tpo .deps/Huffman_Codes.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT locateOnGenome.o -MD -MP -MF .deps/locateOnGenome.Tpo -c -o locateOnGenome.o ../../../src/libSSA/locateOnGenome.cpp
mv -f .deps/locateOnGenome.Tpo .deps/locateOnGenome.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT locateTags.o -MD -MP -MF .deps/locateTags.Tpo -c -o locateTags.o ../../../src/libSSA/locateTags.cpp
In file included from ../../../src/libSSA/locateTags.h:108:0,
                 from ../../../src/libSSA/locateTags.cpp:102:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/locateTags.Tpo .deps/locateTags.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT SSA.o -MD -MP -MF .deps/SSA.Tpo -c -o SSA.o ../../../src/libSSA/SSA.cpp
mv -f .deps/SSA.Tpo .deps/SSA.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT utils.o -MD -MP -MF .deps/utils.Tpo -c -o utils.o ../../../src/libSSA/utils.cpp
mv -f .deps/utils.Tpo .deps/utils.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT GenomeInfo.o -MD -MP -MF .deps/GenomeInfo.Tpo -c -o GenomeInfo.o ../../../src/libSSA/GenomeInfo.cpp
mv -f .deps/GenomeInfo.Tpo .deps/GenomeInfo.Po
rm -f libSSA.a
ar cru libSSA.a bitarray.o bitrankw32int.o chrPosition.o HuffAlphabetRank.o Huffman_Codes.o locateOnGenome.o locateTags.o SSA.o utils.o GenomeInfo.o       
ranlib libSSA.a
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT cracIndex.o -MD -MP -MF .deps/cracIndex.Tpo -c -o cracIndex.o ../../../src/libSSA/cracIndex.cpp
In file included from ../../../src/libSSA/seqan/sequence.h:57:0,
                 from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt/blockwise_sa.h>:10,
                 from ../../../src/libSSA/cracIndex.cpp:115:
../../../src/libSSA/seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts<const seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> > >’:
../../../src/libSSA/seqan/sequence/string_packed.h:906:131:   required from ‘typename seqan::Position<const seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type seqan::position(const seqan::Iter<TContainer, seqan::Packed<THostspec> >&) [with TContainer = const seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >; THostspec = seqan::Alloc<void>; typename seqan::Position<const seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type = long unsigned int]’
../../../src/libSSA/seqan/sequence/string_packed.h:1237:40:   required from ‘typename seqan::Difference<seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type seqan::operator-(const seqan::Iter<TContainer, seqan::Packed<THostspec> >&, const seqan::Iter<TContainer, seqan::Packed<THostspec> >&) [with TContainer = const seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >; THostspec = seqan::Alloc<void>; typename seqan::Difference<seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type = long int]’
../../../src/libSSA/seqan/sequence/string_base.h:181:51:   required from ‘typename seqan::Size<const seqan::String<TValue, TSpec> >::Type seqan::length(const seqan::String<TValue, TSpec>&) [with TValue = seqan::SimpleType<unsigned char, seqan::_Dna>; TSpec = seqan::Packed<>; typename seqan::Size<const seqan::String<TValue, TSpec> >::Type = long unsigned int]’
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt/blockwise_sa.h>:354:32:   required from here
../../../src/libSSA/seqan/sequence/string_packed.h:291:2: warning: comparison between ‘enum seqan::BitsPerValue<seqan::SimpleType<unsigned char, seqan::_Dna> >::<anonymous>’ and ‘enum seqan::BitsPerValue<unsigned int>::<anonymous>’ [-Wenum-compare]
../../../src/libSSA/seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts<seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> > >’:
../../../src/libSSA/seqan/sequence/string_packed.h:958:79:   required from ‘typename seqan::GetValue<const seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type seqan::getValue(const seqan::Iter<TContainer, seqan::Packed<THostspec> >&) [with TContainer = seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >; THostspec = seqan::Alloc<void>; typename seqan::GetValue<const seqan::Iter<TContainer, seqan::Packed<THostspec> > >::Type = seqan::SimpleType<unsigned char, seqan::_Dna>]’
../../../src/libSSA/seqan/basic/basic_proxy.h:242:26:   required from ‘typename seqan::GetValue<const seqan::Proxy<TSpec> >::Type seqan::getValue(const seqan::Proxy<TSpec>&) [with TSpec = seqan::IteratorProxy<seqan::Iter<seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::GetValue<const seqan::Proxy<TSpec> >::Type = seqan::SimpleType<unsigned char, seqan::_Dna>]’
../../../src/libSSA/seqan/basic/basic_proxy.h:272:42:   required from ‘typename seqan::Convert<TTarget, const seqan::Proxy<TSourceSpec> >::Type seqan::convertImpl(seqan::Convert<TTarget, T>, const seqan::Proxy<TSourceSpec>&) [with TTarget = char; T = seqan::Proxy<seqan::IteratorProxy<seqan::Iter<seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >, seqan::Packed<> > > >; TSpec = seqan::IteratorProxy<seqan::Iter<seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::Convert<TTarget, const seqan::Proxy<TSourceSpec> >::Type = char]’
../../../src/libSSA/seqan/basic/basic_converter.h:111:56:   required from ‘typename seqan::Convert<TTarget, TSource>::Type seqan::convert(const TSource&) [with TTarget = char; TSource = seqan::Proxy<seqan::IteratorProxy<seqan::Iter<seqan::String<seqan::SimpleType<unsigned char, seqan::_Dna>, seqan::Packed<> >, seqan::Packed<> > > >; typename seqan::Convert<TTarget, TSource>::Type = char]’
../../../src/libSSA/cracIndex.cpp:270:50:   required from here
../../../src/libSSA/seqan/sequence/string_packed.h:291:2: warning: comparison between ‘enum seqan::BitsPerValue<seqan::SimpleType<unsigned char, seqan::_Dna> >::<anonymous>’ and ‘enum seqan::BitsPerValue<unsigned int>::<anonymous>’ [-Wenum-compare]
mv -f .deps/cracIndex.Tpo .deps/cracIndex.Po
/bin/sh ../../libtool --tag=CXX   --mode=link g++   -lm -lpthread -lSSA -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA/>  -o crac-index cracIndex.o libSSA.a -lpthread -lm 
libtool: link: g++ -o crac-index cracIndex.o  -lSSA -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA/> libSSA.a -lpthread -lm
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA'>
Making all in libgzstream
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream'>
g++ -DHAVE_CONFIG_H -I. -I../../../src/libgzstream -I../../config   -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gzstream.o -MD -MP -MF .deps/gzstream.Tpo -c -o gzstream.o ../../../src/libgzstream/gzstream.cpp
mv -f .deps/gzstream.Tpo .deps/gzstream.Po
rm -f libgzstream.a
ar cru libgzstream.a gzstream.o 
ranlib libgzstream.a
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream'>
Making all in libGkArrays
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays'>
Making all in src
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src'>
Making all in kseq
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/kseq'>
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/kseq'>
Making all in sux
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/sux'>
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/sux'>
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src'>
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gkArrays.lo -MD -MP -MF .deps/gkArrays.Tpo -c -o gkArrays.lo ../../../../src/libGkArrays/src/gkArrays.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArrays.lo -MD -MP -MF .deps/gkArrays.Tpo -c ../../../../src/libGkArrays/src/gkArrays.cpp  -fPIC -DPIC -o .libs/gkArrays.o
In file included from ../../../../src/libGkArrays/src/gkArrays.h:115:0,
                 from ../../../../src/libGkArrays/src/gkArrays.cpp:113:
../../../../src/libGkArrays/src/readsReader.h:111:1: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArrays.lo -MD -MP -MF .deps/gkArrays.Tpo -c ../../../../src/libGkArrays/src/gkArrays.cpp -o gkArrays.o >/dev/null 2>&1
mv -f .deps/gkArrays.Tpo .deps/gkArrays.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT solArray.lo -MD -MP -MF .deps/solArray.Tpo -c -o solArray.lo ../../../../src/libGkArrays/src/solArray.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT solArray.lo -MD -MP -MF .deps/solArray.Tpo -c ../../../../src/libGkArrays/src/solArray.cpp  -fPIC -DPIC -o .libs/solArray.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT solArray.lo -MD -MP -MF .deps/solArray.Tpo -c ../../../../src/libGkArrays/src/solArray.cpp -o solArray.o >/dev/null 2>&1
mv -f .deps/solArray.Tpo .deps/solArray.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo ../../../../src/libGkArrays/src/utils.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c ../../../../src/libGkArrays/src/utils.cpp  -fPIC -DPIC -o .libs/utils.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c ../../../../src/libGkArrays/src/utils.cpp -o utils.o >/dev/null 2>&1
mv -f .deps/utils.Tpo .deps/utils.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gkArraysBuilder.lo -MD -MP -MF .deps/gkArraysBuilder.Tpo -c -o gkArraysBuilder.lo ../../../../src/libGkArrays/src/gkArraysBuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArraysBuilder.lo -MD -MP -MF .deps/gkArraysBuilder.Tpo -c ../../../../src/libGkArrays/src/gkArraysBuilder.cpp  -fPIC -DPIC -o .libs/gkArraysBuilder.o
In file included from ../../../../src/libGkArrays/src/gkArrays.h:115:0,
                 from ../../../../src/libGkArrays/src/gkArraysBuilder.h:105,
                 from ../../../../src/libGkArrays/src/gkArraysBuilder.cpp:103:
../../../../src/libGkArrays/src/readsReader.h:111:1: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArraysBuilder.lo -MD -MP -MF .deps/gkArraysBuilder.Tpo -c ../../../../src/libGkArrays/src/gkArraysBuilder.cpp -o gkArraysBuilder.o >/dev/null 2>&1
mv -f .deps/gkArraysBuilder.Tpo .deps/gkArraysBuilder.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gkSABuilder.lo -MD -MP -MF .deps/gkSABuilder.Tpo -c -o gkSABuilder.lo ../../../../src/libGkArrays/src/gkSABuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkSABuilder.lo -MD -MP -MF .deps/gkSABuilder.Tpo -c ../../../../src/libGkArrays/src/gkSABuilder.cpp  -fPIC -DPIC -o .libs/gkSABuilder.o
In file included from ../../../../src/libGkArrays/src/gkArrays.h:115:0,
                 from ../../../../src/libGkArrays/src/gkSABuilder.h:108,
                 from ../../../../src/libGkArrays/src/gkSABuilder.cpp:104:
../../../../src/libGkArrays/src/readsReader.h:111:1: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkSABuilder.lo -MD -MP -MF .deps/gkSABuilder.Tpo -c ../../../../src/libGkArrays/src/gkSABuilder.cpp -o gkSABuilder.o >/dev/null 2>&1
mv -f .deps/gkSABuilder.Tpo .deps/gkSABuilder.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gkCFPSBuilder.lo -MD -MP -MF .deps/gkCFPSBuilder.Tpo -c -o gkCFPSBuilder.lo ../../../../src/libGkArrays/src/gkCFPSBuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkCFPSBuilder.lo -MD -MP -MF .deps/gkCFPSBuilder.Tpo -c ../../../../src/libGkArrays/src/gkCFPSBuilder.cpp  -fPIC -DPIC -o .libs/gkCFPSBuilder.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkCFPSBuilder.lo -MD -MP -MF .deps/gkCFPSBuilder.Tpo -c ../../../../src/libGkArrays/src/gkCFPSBuilder.cpp -o gkCFPSBuilder.o >/dev/null 2>&1
mv -f .deps/gkCFPSBuilder.Tpo .deps/gkCFPSBuilder.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT gkIFABuilder.lo -MD -MP -MF .deps/gkIFABuilder.Tpo -c -o gkIFABuilder.lo ../../../../src/libGkArrays/src/gkIFABuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkIFABuilder.lo -MD -MP -MF .deps/gkIFABuilder.Tpo -c ../../../../src/libGkArrays/src/gkIFABuilder.cpp  -fPIC -DPIC -o .libs/gkIFABuilder.o
In file included from ../../../../src/libGkArrays/src/gkArrays.h:115:0,
                 from ../../../../src/libGkArrays/src/gkIFABuilder.h:107,
                 from ../../../../src/libGkArrays/src/gkIFABuilder.cpp:105:
../../../../src/libGkArrays/src/readsReader.h:111:1: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkIFABuilder.lo -MD -MP -MF .deps/gkIFABuilder.Tpo -c ../../../../src/libGkArrays/src/gkIFABuilder.cpp -o gkIFABuilder.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT readsReader.lo -MD -MP -MF .deps/readsReader.Tpo -c -o readsReader.lo ../../../../src/libGkArrays/src/readsReader.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT readsReader.lo -MD -MP -MF .deps/readsReader.Tpo -c ../../../../src/libGkArrays/src/readsReader.cpp  -fPIC -DPIC -o .libs/readsReader.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT readsReader.lo -MD -MP -MF .deps/readsReader.Tpo -c ../../../../src/libGkArrays/src/readsReader.cpp -o readsReader.o >/dev/null 2>&1
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libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT largebinvect.lo -MD -MP -MF .deps/largebinvect.Tpo -c ../../../../src/libGkArrays/src/largebinvect.cxx  -fPIC -DPIC -o .libs/largebinvect.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT largebinvect.lo -MD -MP -MF .deps/largebinvect.Tpo -c ../../../../src/libGkArrays/src/largebinvect.cxx -o largebinvect.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c -o bitvector.lo ../../../../src/libGkArrays/src/bitvector.cxx
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c ../../../../src/libGkArrays/src/bitvector.cxx  -fPIC -DPIC -o .libs/bitvector.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c ../../../../src/libGkArrays/src/bitvector.cxx -o bitvector.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT rank9b.lo -MD -MP -MF .deps/rank9b.Tpo -c -o rank9b.lo `test -f 'sux/rank9b.cpp' || echo '../../../../src/libGkArrays/src/'`sux/rank9b.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT rank9b.lo -MD -MP -MF .deps/rank9b.Tpo -c ../../../../src/libGkArrays/src/sux/rank9b.cpp  -fPIC -DPIC -o .libs/rank9b.o
../../../../src/libGkArrays/src/sux/rank9b.cpp: In member function 'uint64_t rank9b::rank(uint64_t)':
../../../../src/libGkArrays/src/sux/rank9b.cpp:144:95: warning: suggest parentheses around '-' inside '>>' [-Wparentheses]
../../../../src/libGkArrays/src/sux/rank9b.cpp: In member function 'uint64_t rank9b::select(uint64_t)':
../../../../src/libGkArrays/src/sux/rank9b.cpp:207:87: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT rank9b.lo -MD -MP -MF .deps/rank9b.Tpo -c ../../../../src/libGkArrays/src/sux/rank9b.cpp -o rank9b.o >/dev/null 2>&1
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/bin/sh ../libtool --tag=CXX   --mode=link g++   -version-info 2:0:1 -release 2.0.3 -lpthread    -o libGkArrays.la -rpath <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_inst/lib> gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo  -lz 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.7.2/crtbeginS.o  .libs/gkArrays.o .libs/solArray.o .libs/utils.o .libs/gkArraysBuilder.o .libs/gkSABuilder.o .libs/gkCFPSBuilder.o .libs/gkIFABuilder.o .libs/readsReader.o .libs/largebinvect.o .libs/bitvector.o .libs/rank9b.o   -lpthread -lz -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-redhat-linux/4.7.2/crtendS.o /usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/crtn.o    -Wl,-soname -Wl,libGkArrays-2.0.3.so.1 -o .libs/libGkArrays-2.0.3.so.1.1.0
libtool: link: (cd ".libs" && rm -f "libGkArrays-2.0.3.so.1" && ln -s "libGkArrays-2.0.3.so.1.1.0" "libGkArrays-2.0.3.so.1")
libtool: link: (cd ".libs" && rm -f "libGkArrays.so" && ln -s "libGkArrays-2.0.3.so.1.1.0" "libGkArrays.so")
libtool: link: ar cru .libs/libGkArrays.a  gkArrays.o solArray.o utils.o gkArraysBuilder.o gkSABuilder.o gkCFPSBuilder.o gkIFABuilder.o readsReader.o largebinvect.o bitvector.o rank9b.o
libtool: link: ranlib .libs/libGkArrays.a
libtool: link: ( cd ".libs" && rm -f "libGkArrays.la" && ln -s "../libGkArrays.la" "libGkArrays.la" )
g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/../../../src/libGkArrays> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT buildTables.o -MD -MP -MF .deps/buildTables.Tpo -c -o buildTables.o ../../../../src/libGkArrays/src/buildTables.cpp
In file included from ../../../../src/libGkArrays/src/gkArrays.h:115:0,
                 from ../../../../src/libGkArrays/src/buildTables.cpp:111:
../../../../src/libGkArrays/src/readsReader.h:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/buildTables.Tpo .deps/buildTables.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++   -lGkArrays -lpthread   -o buildTables buildTables.o libGkArrays.la -lz 
libtool: link: g++ -o .libs/buildTables buildTables.o  <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/.libs/libGkArrays.so> -lpthread ./.libs/libGkArrays.so -lz -Wl,-rpath -Wl,<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_inst/lib>
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src'>
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src'>
Making all in tests
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/tests'>
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/tests'>
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays'>
cp "libGkArrays.pc" "libGkArrays-2.0.3.pc"
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays'>
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays'>
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src'>
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT Classifier.o -MD -MP -MF .deps/Classifier.Tpo -c -o Classifier.o ../../src/Classifier.cpp
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/Classifier.h:105,
                 from ../../src/Classifier.cpp:101:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/Classifier.Tpo .deps/Classifier.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT classifyTags.o -MD -MP -MF .deps/classifyTags.Tpo -c -o classifyTags.o ../../src/classifyTags.cpp
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/classifyTags.h:104,
                 from ../../src/classifyTags.cpp:101:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/classifyTags.Tpo .deps/classifyTags.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT locateServer.o -MD -MP -MF .deps/locateServer.Tpo -c -o locateServer.o ../../src/locateServer.cpp
../../src/locateServer.cpp: In function ‘void* launchSubServer(void*)’:
../../src/locateServer.cpp:498:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable]
../../src/locateServer.cpp: In function ‘void locateServer(ClassifyTags*, const char*, const char*)’:
../../src/locateServer.cpp:746:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable]
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/locateServer.cpp:110:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>: At global scope:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/locateServer.Tpo .deps/locateServer.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT crac.o -MD -MP -MF .deps/crac.Tpo -c -o crac.o ../../src/crac.cpp
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/crac.cpp:109:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/crac.Tpo .deps/crac.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT Parameters.o -MD -MP -MF .deps/Parameters.Tpo -c -o Parameters.o ../../src/Parameters.cpp
mv -f .deps/Parameters.Tpo .deps/Parameters.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT SupportBreak.o -MD -MP -MF .deps/SupportBreak.Tpo -c -o SupportBreak.o ../../src/SupportBreak.cpp
../../src/SupportBreak.cpp: In member function ‘uint SupportBreak::getPositionEndBreakOnTheRead(int)’:
../../src/SupportBreak.cpp:313:1: warning: control reaches end of non-void function [-Wreturn-type]
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/Support.h:107,
                 from ../../src/SupportBreak.cpp:103:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>: At global scope:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/SupportBreak.Tpo .deps/SupportBreak.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT CandidatBreak.o -MD -MP -MF .deps/CandidatBreak.Tpo -c -o CandidatBreak.o ../../src/CandidatBreak.cpp
mv -f .deps/CandidatBreak.Tpo .deps/CandidatBreak.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT Support.o -MD -MP -MF .deps/Support.Tpo -c -o Support.o ../../src/Support.cpp
In file included from <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/gkArrays.h>:115:0,
                 from ../../src/Support.h:107,
                 from ../../src/Support.cpp:102:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/readsReader.h>:111:1: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
mv -f .deps/Support.Tpo .deps/Support.Po
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/../src/libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG   -MT utils.o -MD -MP -MF .deps/utils.Tpo -c -o utils.o ../../src/utils.cpp
mv -f .deps/utils.Tpo .deps/utils.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++   -lGkArrays -lm -lpthread -lSSA -lReadsInfo -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libReadsInfo> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/.libs>  -o crac Classifier.o classifyTags.o locateServer.o crac.o Parameters.o SupportBreak.o CandidatBreak.o Support.o utils.o <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA/libSSA.a> <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libReadsInfo/libReadsInfo.a> <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream/libgzstream.a> -lpthread -lm 
libtool: link: g++ -o .libs/crac Classifier.o classifyTags.o locateServer.o crac.o Parameters.o SupportBreak.o CandidatBreak.o Support.o utils.o  <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/.libs/libGkArrays.so> -lSSA -lReadsInfo -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libReadsInfo> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/.libs> <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libSSA/libSSA.a> <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libReadsInfo/libReadsInfo.a> <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libgzstream/libgzstream.a> -lpthread -lm -Wl,-rpath -Wl,<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_inst/lib>
/usr/bin/ld: <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src/libGkArrays/src/.libs/libGkArrays.so>: undefined reference to symbol 'gzclose'
/usr/bin/ld: note: 'gzclose' is defined in DSO /lib64/libz.so.1 so try adding it to the linker command line
/lib64/libz.so.1: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make[3]: *** [crac] Error 1
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build/src'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-fedora64/ws/crac-1.3.0/crac-1.3.0/_build'>
make: *** [distcheck] Error 1
Build step 'Execute shell' marked build as failure
TAP Reports Processing: START
Looking for TAP results report in workspace using pattern: **/*.tap 
Saving reports...
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testConsistency.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testConsistency.cpp.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testPairedEnd.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testPairedEnd.cpp.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testVariableFixed.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/src/libGkArrays/tests/testVariableFixed.cpp.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15605.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15605.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15605_2.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15605_2.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15630.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15630.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15639.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15639.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15646.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15646.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15649-2.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15649-2.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15649.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15649.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15672.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15672.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15677.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/bug/bug-15677.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/causes/snp.fa.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/causes/snp.fa.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/cigar/consistency.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/cigar/consistency.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/cigar/consistency2.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-fedora64/builds/2013-05-04_02-01-07/tap-master-files/crac-1.3.0/test_f/cigar/consistency2.tap].
TAP Reports Processing: FINISH
[WARNINGS] Skipping publisher since build result is FAILURE



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