[Crac-bugs] Software application

Rivals Eric rivals at lirmm.fr
Jeu 30 Mai 17:57:36 CEST 2013


dear Rafet

yes you need a reference genome, or at least a reference sequence with 
which you compare your reads with. It can also be: a set of contigs, a 
related genome, an assembled transcriptome, ... depending on the 
analysis you want to perform.

best regards
Eric

Le 30/05/2013 17:53, Rafet F. Al-Tobasei a écrit :
> Dear Eric,
>
> Do I need to have a reference genome or it works without reference genome.
>
> Sincerely,
>
> Rafet Al-Tobasei
> Computational Science
> MTSU
> ________________________________________
> From: rivals [rivals at lirmm.fr]
> Sent: Tuesday, May 21, 2013 1:14 AM
> To: Rafet F. Al-Tobasei
> Cc: crac-bugs at lists.gforge.inria.fr
> Subject: Re: [Crac-bugs] Software application
>
>   On Mon, 20 May 2013 16:10:03 +0000, "Rafet F. Al-Tobasei"
>   <ra2p at mtmail.mtsu.edu> wrote:
>> Hi,
>>
>> I 'm a PhD student working on detecting splice variant on nonhuman
>> species (fish). Does this software able to work with nonhuman spices.
>>
>> Rafet Al-Tobasei
>>   PhD Candidate
>>   Computational Science Department
>>   Middle Tennessee State University
>   Dear Rafet
>
>   Thkx for your interest in CRAC.
>   yes indeed. As long as you have a genome sequence. Please try it.
>   best regards,
>   Eric
>
>

-- 
Eric RIVALS (PhD) - rivals at lirmm.fr - www.lirmm.fr/~rivals
CNRS Research Director & Head of GDR Bioinformatique Moléculaire
LIRMM - UMR 5506 - CC 06 001
95 Rue de la Galéra - 34095 Montpellier cedex 5 FRANCE
Tel. (33 or 0 from France) 4 67 41 86 64
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http://www.gdr-bim.u-psud.fr


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