[Crac-bugs] Build failed in Jenkins: crac-dev » --disable-shared,crac-debian32 #71

ci-crac at inria.fr ci-crac at inria.fr
Mer 26 Mar 02:04:37 CET 2014


See <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/71/>

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checking for unistd.h... (cached) yes
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configure: creating ./config.status
config.status: creating postinst
chmod: cannot access `prerm': No such file or directory
config.status: creating prerm
config.status: creating libProgressBar.lsm
config.status: creating libProgressBar.spec
config.status: creating control
config.status: creating libProgressBar.pc
config.status: creating Makefile
config.status: creating libProgressBar/Makefile
config.status: creating doc/Makefile
config.status: creating doc/libProgressBar.3
config.status: creating libProgressBar/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build'>
Making all in src
make[2]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src'>
Making all in libReadsInfo
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libReadsInfo'>
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-BioTagIndelInfo.o -MD -MP -MF .deps/libReadsInfo_a-BioTagIndelInfo.Tpo -c -o libReadsInfo_a-BioTagIndelInfo.o `test -f 'BioTagIndelInfo.cpp' || echo '../../../src/libReadsInfo/'`BioTagIndelInfo.cpp
mv -f .deps/libReadsInfo_a-BioTagIndelInfo.Tpo .deps/libReadsInfo_a-BioTagIndelInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-BioUndeterminedInfo.o -MD -MP -MF .deps/libReadsInfo_a-BioUndeterminedInfo.Tpo -c -o libReadsInfo_a-BioUndeterminedInfo.o `test -f 'BioUndeterminedInfo.cpp' || echo '../../../src/libReadsInfo/'`BioUndeterminedInfo.cpp
mv -f .deps/libReadsInfo_a-BioUndeterminedInfo.Tpo .deps/libReadsInfo_a-BioUndeterminedInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-cigarTypes.o -MD -MP -MF .deps/libReadsInfo_a-cigarTypes.Tpo -c -o libReadsInfo_a-cigarTypes.o `test -f 'cigarTypes.cpp' || echo '../../../src/libReadsInfo/'`cigarTypes.cpp
mv -f .deps/libReadsInfo_a-cigarTypes.Tpo .deps/libReadsInfo_a-cigarTypes.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-Cigar.o -MD -MP -MF .deps/libReadsInfo_a-Cigar.Tpo -c -o libReadsInfo_a-Cigar.o `test -f 'Cigar.cpp' || echo '../../../src/libReadsInfo/'`Cigar.cpp
mv -f .deps/libReadsInfo_a-Cigar.Tpo .deps/libReadsInfo_a-Cigar.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-DuplicationInfo.o -MD -MP -MF .deps/libReadsInfo_a-DuplicationInfo.Tpo -c -o libReadsInfo_a-DuplicationInfo.o `test -f 'DuplicationInfo.cpp' || echo '../../../src/libReadsInfo/'`DuplicationInfo.cpp
mv -f .deps/libReadsInfo_a-DuplicationInfo.Tpo .deps/libReadsInfo_a-DuplicationInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-genericInfo.o -MD -MP -MF .deps/libReadsInfo_a-genericInfo.Tpo -c -o libReadsInfo_a-genericInfo.o `test -f 'genericInfo.cpp' || echo '../../../src/libReadsInfo/'`genericInfo.cpp
mv -f .deps/libReadsInfo_a-genericInfo.Tpo .deps/libReadsInfo_a-genericInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-IndelInfo.o -MD -MP -MF .deps/libReadsInfo_a-IndelInfo.Tpo -c -o libReadsInfo_a-IndelInfo.o `test -f 'IndelInfo.cpp' || echo '../../../src/libReadsInfo/'`IndelInfo.cpp
mv -f .deps/libReadsInfo_a-IndelInfo.Tpo .deps/libReadsInfo_a-IndelInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-repetitionInfo.o -MD -MP -MF .deps/libReadsInfo_a-repetitionInfo.Tpo -c -o libReadsInfo_a-repetitionInfo.o `test -f 'repetitionInfo.cpp' || echo '../../../src/libReadsInfo/'`repetitionInfo.cpp
mv -f .deps/libReadsInfo_a-repetitionInfo.Tpo .deps/libReadsInfo_a-repetitionInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SeqErrInfo.o -MD -MP -MF .deps/libReadsInfo_a-SeqErrInfo.Tpo -c -o libReadsInfo_a-SeqErrInfo.o `test -f 'SeqErrInfo.cpp' || echo '../../../src/libReadsInfo/'`SeqErrInfo.cpp
mv -f .deps/libReadsInfo_a-SeqErrInfo.Tpo .deps/libReadsInfo_a-SeqErrInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SNPInfo.o -MD -MP -MF .deps/libReadsInfo_a-SNPInfo.Tpo -c -o libReadsInfo_a-SNPInfo.o `test -f 'SNPInfo.cpp' || echo '../../../src/libReadsInfo/'`SNPInfo.cpp
mv -f .deps/libReadsInfo_a-SNPInfo.Tpo .deps/libReadsInfo_a-SNPInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SpliceInfo.o -MD -MP -MF .deps/libReadsInfo_a-SpliceInfo.Tpo -c -o libReadsInfo_a-SpliceInfo.o `test -f 'SpliceInfo.cpp' || echo '../../../src/libReadsInfo/'`SpliceInfo.cpp
mv -f .deps/libReadsInfo_a-SpliceInfo.Tpo .deps/libReadsInfo_a-SpliceInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SpliceInterInfo.o -MD -MP -MF .deps/libReadsInfo_a-SpliceInterInfo.Tpo -c -o libReadsInfo_a-SpliceInterInfo.o `test -f 'SpliceInterInfo.cpp' || echo '../../../src/libReadsInfo/'`SpliceInterInfo.cpp
mv -f .deps/libReadsInfo_a-SpliceInterInfo.Tpo .deps/libReadsInfo_a-SpliceInterInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SpliceIntraInfo.o -MD -MP -MF .deps/libReadsInfo_a-SpliceIntraInfo.Tpo -c -o libReadsInfo_a-SpliceIntraInfo.o `test -f 'SpliceIntraInfo.cpp' || echo '../../../src/libReadsInfo/'`SpliceIntraInfo.cpp
mv -f .deps/libReadsInfo_a-SpliceIntraInfo.Tpo .deps/libReadsInfo_a-SpliceIntraInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SpliceNoCoverInfo.o -MD -MP -MF .deps/libReadsInfo_a-SpliceNoCoverInfo.Tpo -c -o libReadsInfo_a-SpliceNoCoverInfo.o `test -f 'SpliceNoCoverInfo.cpp' || echo '../../../src/libReadsInfo/'`SpliceNoCoverInfo.cpp
mv -f .deps/libReadsInfo_a-SpliceNoCoverInfo.Tpo .deps/libReadsInfo_a-SpliceNoCoverInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-SplicingInfo.o -MD -MP -MF .deps/libReadsInfo_a-SplicingInfo.Tpo -c -o libReadsInfo_a-SplicingInfo.o `test -f 'SplicingInfo.cpp' || echo '../../../src/libReadsInfo/'`SplicingInfo.cpp
mv -f .deps/libReadsInfo_a-SplicingInfo.Tpo .deps/libReadsInfo_a-SplicingInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-samLine.o -MD -MP -MF .deps/libReadsInfo_a-samLine.Tpo -c -o libReadsInfo_a-samLine.o `test -f 'samLine.cpp' || echo '../../../src/libReadsInfo/'`samLine.cpp
mv -f .deps/libReadsInfo_a-samLine.Tpo .deps/libReadsInfo_a-samLine.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-tagInfo.o -MD -MP -MF .deps/libReadsInfo_a-tagInfo.Tpo -c -o libReadsInfo_a-tagInfo.o `test -f 'tagInfo.cpp' || echo '../../../src/libReadsInfo/'`tagInfo.cpp
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/readsReader.h>:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/libReadsInfo_a-tagInfo.Tpo .deps/libReadsInfo_a-tagInfo.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libReadsInfo -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libReadsInfo/../libGkArrays/src/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT libReadsInfo_a-undeterminedErrorInfo.o -MD -MP -MF .deps/libReadsInfo_a-undeterminedErrorInfo.Tpo -c -o libReadsInfo_a-undeterminedErrorInfo.o `test -f 'undeterminedErrorInfo.cpp' || echo '../../../src/libReadsInfo/'`undeterminedErrorInfo.cpp
mv -f .deps/libReadsInfo_a-undeterminedErrorInfo.Tpo .deps/libReadsInfo_a-undeterminedErrorInfo.Po
rm -f libReadsInfo.a
ar cru libReadsInfo.a libReadsInfo_a-BioTagIndelInfo.o libReadsInfo_a-BioUndeterminedInfo.o libReadsInfo_a-cigarTypes.o libReadsInfo_a-Cigar.o libReadsInfo_a-DuplicationInfo.o libReadsInfo_a-genericInfo.o libReadsInfo_a-IndelInfo.o libReadsInfo_a-repetitionInfo.o libReadsInfo_a-SeqErrInfo.o libReadsInfo_a-SNPInfo.o libReadsInfo_a-SpliceInfo.o libReadsInfo_a-SpliceInterInfo.o libReadsInfo_a-SpliceIntraInfo.o libReadsInfo_a-SpliceNoCoverInfo.o libReadsInfo_a-SplicingInfo.o libReadsInfo_a-samLine.o libReadsInfo_a-tagInfo.o libReadsInfo_a-undeterminedErrorInfo.o 
ranlib libReadsInfo.a
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libReadsInfo'>
Making all in libSSA
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libSSA'>
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT bitarray.o -MD -MP -MF .deps/bitarray.Tpo -c -o bitarray.o ../../../src/libSSA/bitarray.cpp
mv -f .deps/bitarray.Tpo .deps/bitarray.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT bitrankw32int.o -MD -MP -MF .deps/bitrankw32int.Tpo -c -o bitrankw32int.o ../../../src/libSSA/bitrankw32int.cpp
mv -f .deps/bitrankw32int.Tpo .deps/bitrankw32int.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT chrPosition.o -MD -MP -MF .deps/chrPosition.Tpo -c -o chrPosition.o ../../../src/libSSA/chrPosition.cpp
mv -f .deps/chrPosition.Tpo .deps/chrPosition.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT HuffAlphabetRank.o -MD -MP -MF .deps/HuffAlphabetRank.Tpo -c -o HuffAlphabetRank.o ../../../src/libSSA/HuffAlphabetRank.cpp
mv -f .deps/HuffAlphabetRank.Tpo .deps/HuffAlphabetRank.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT Huffman_Codes.o -MD -MP -MF .deps/Huffman_Codes.Tpo -c -o Huffman_Codes.o ../../../src/libSSA/Huffman_Codes.cpp
mv -f .deps/Huffman_Codes.Tpo .deps/Huffman_Codes.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT locateOnGenome.o -MD -MP -MF .deps/locateOnGenome.Tpo -c -o locateOnGenome.o ../../../src/libSSA/locateOnGenome.cpp
mv -f .deps/locateOnGenome.Tpo .deps/locateOnGenome.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT locateTags.o -MD -MP -MF .deps/locateTags.Tpo -c -o locateTags.o ../../../src/libSSA/locateTags.cpp
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src/readsReader.h>:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/locateTags.Tpo .deps/locateTags.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT SSA.o -MD -MP -MF .deps/SSA.Tpo -c -o SSA.o ../../../src/libSSA/SSA.cpp
mv -f .deps/SSA.Tpo .deps/SSA.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT utils.o -MD -MP -MF .deps/utils.Tpo -c -o utils.o ../../../src/libSSA/utils.cpp
mv -f .deps/utils.Tpo .deps/utils.Po
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT GenomeInfo.o -MD -MP -MF .deps/GenomeInfo.Tpo -c -o GenomeInfo.o ../../../src/libSSA/GenomeInfo.cpp
mv -f .deps/GenomeInfo.Tpo .deps/GenomeInfo.Po
rm -f libSSA.a
ar cru libSSA.a bitarray.o bitrankw32int.o chrPosition.o HuffAlphabetRank.o Huffman_Codes.o locateOnGenome.o locateTags.o SSA.o utils.o GenomeInfo.o       
ranlib libSSA.a
g++ -DHAVE_CONFIG_H -I. -I../../../src/libSSA -I../../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT cracIndex.o -MD -MP -MF .deps/cracIndex.Tpo -c -o cracIndex.o ../../../src/libSSA/cracIndex.cpp
mv -f .deps/cracIndex.Tpo .deps/cracIndex.Po
/bin/bash ../../libtool --tag=CXX   --mode=link g++   -lm -lpthread -lSSA -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libSSA/>  -o crac-index cracIndex.o libSSA.a -lz -lpthread -lm 
libtool: link: g++ -o crac-index cracIndex.o  -lSSA -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libSSA/> libSSA.a -lz -lpthread -lm
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libSSA'>
Making all in libgzstream
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libgzstream'>
g++ -DHAVE_CONFIG_H -I. -I../../../src/libgzstream -I../../config   -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gzstream.o -MD -MP -MF .deps/gzstream.Tpo -c -o gzstream.o ../../../src/libgzstream/gzstream.cpp
mv -f .deps/gzstream.Tpo .deps/gzstream.Po
rm -f libgzstream.a
ar cru libgzstream.a gzstream.o 
ranlib libgzstream.a
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libgzstream'>
Making all in libGkArrays
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays'>
Making all in src
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src'>
Making all in kseq
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/kseq'>
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/kseq'>
Making all in sux
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/sux'>
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/sux'>
Making all in libProgressBar-1.2.0
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
Making all in libProgressBar
make[6]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar'>
make[7]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
make[7]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
make  all-am
make[7]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar'>
make[8]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
make[8]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar   -Wall -ansi -funroll-loops -O4 -DNDEBUG  -O6 -Wall --pedantic --ansi -MT progressBar.lo -MD -MP -MF .deps/progressBar.Tpo -c -o progressBar.lo ../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/progressBar.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar -Wall -ansi -funroll-loops -O4 -DNDEBUG -O6 -Wall --pedantic --ansi -MT progressBar.lo -MD -MP -MF .deps/progressBar.Tpo -c ../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/progressBar.cpp -o progressBar.o
mv -f .deps/progressBar.Tpo .deps/progressBar.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -O6 -Wall --pedantic --ansi -version-info 1:2:1 -release 1.2.0   -o libProgressBar.la -rpath <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_inst/lib> progressBar.lo  
libtool: link: ar cru .libs/libProgressBar.a  progressBar.o
libtool: link: ranlib .libs/libProgressBar.a
libtool: link: ( cd ".libs" && rm -f "libProgressBar.la" && ln -s "../libProgressBar.la" "libProgressBar.la" )
g++ -DHAVE_CONFIG_H -I. -I../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar   -Wall -ansi -funroll-loops -O4 -DNDEBUG  -O6 -Wall --pedantic --ansi -MT testPB.o -MD -MP -MF .deps/testPB.Tpo -c -o testPB.o ../../../../../../src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/testPB.cpp
mv -f .deps/testPB.Tpo .deps/testPB.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++  -O6 -Wall --pedantic --ansi -lProgressBar   -o testProgressBar testPB.o libProgressBar.la 
libtool: link: g++ -O6 -Wall --pedantic --ansi -o testProgressBar testPB.o  <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.a> ./.libs/libProgressBar.a
make[7]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar'>
make[6]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar'>
make[6]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
cp "libProgressBar.pc" "libProgressBar-1.2.0.pc"
make[6]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0'>
make[5]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src'>
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gkArrays.lo -MD -MP -MF .deps/gkArrays.Tpo -c -o gkArrays.lo ../../../../src/libGkArrays/src/gkArrays.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArrays.lo -MD -MP -MF .deps/gkArrays.Tpo -c ../../../../src/libGkArrays/src/gkArrays.cpp -o gkArrays.o
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT solArray.lo -MD -MP -MF .deps/solArray.Tpo -c -o solArray.lo ../../../../src/libGkArrays/src/solArray.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT solArray.lo -MD -MP -MF .deps/solArray.Tpo -c ../../../../src/libGkArrays/src/solArray.cpp -o solArray.o
mv -f .deps/solArray.Tpo .deps/solArray.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo ../../../../src/libGkArrays/src/utils.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c ../../../../src/libGkArrays/src/utils.cpp -o utils.o
mv -f .deps/utils.Tpo .deps/utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gkArraysBuilder.lo -MD -MP -MF .deps/gkArraysBuilder.Tpo -c -o gkArraysBuilder.lo ../../../../src/libGkArrays/src/gkArraysBuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkArraysBuilder.lo -MD -MP -MF .deps/gkArraysBuilder.Tpo -c ../../../../src/libGkArrays/src/gkArraysBuilder.cpp -o gkArraysBuilder.o
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/gkArraysBuilder.Tpo .deps/gkArraysBuilder.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gkSABuilder.lo -MD -MP -MF .deps/gkSABuilder.Tpo -c -o gkSABuilder.lo ../../../../src/libGkArrays/src/gkSABuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkSABuilder.lo -MD -MP -MF .deps/gkSABuilder.Tpo -c ../../../../src/libGkArrays/src/gkSABuilder.cpp -o gkSABuilder.o
../../../../src/libGkArrays/src/gkSABuilder.cpp: In function ‘int64_t gkarrays::partition(gkarrays::SolArray*, gkarrays::SolArray*, uintSA, uintSA, uintSA)’:
../../../../src/libGkArrays/src/gkSABuilder.cpp:340: warning: suggest parentheses around ‘&&’ within ‘||’
../../../../src/libGkArrays/src/readsReader.h: At global scope:
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/gkSABuilder.Tpo .deps/gkSABuilder.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gkCFPSBuilder.lo -MD -MP -MF .deps/gkCFPSBuilder.Tpo -c -o gkCFPSBuilder.lo ../../../../src/libGkArrays/src/gkCFPSBuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkCFPSBuilder.lo -MD -MP -MF .deps/gkCFPSBuilder.Tpo -c ../../../../src/libGkArrays/src/gkCFPSBuilder.cpp -o gkCFPSBuilder.o
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT gkIFABuilder.lo -MD -MP -MF .deps/gkIFABuilder.Tpo -c -o gkIFABuilder.lo ../../../../src/libGkArrays/src/gkIFABuilder.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT gkIFABuilder.lo -MD -MP -MF .deps/gkIFABuilder.Tpo -c ../../../../src/libGkArrays/src/gkIFABuilder.cpp -o gkIFABuilder.o
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/gkIFABuilder.Tpo .deps/gkIFABuilder.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT readsReader.lo -MD -MP -MF .deps/readsReader.Tpo -c -o readsReader.lo ../../../../src/libGkArrays/src/readsReader.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT readsReader.lo -MD -MP -MF .deps/readsReader.Tpo -c ../../../../src/libGkArrays/src/readsReader.cpp -o readsReader.o
mv -f .deps/readsReader.Tpo .deps/readsReader.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT largebinvect.lo -MD -MP -MF .deps/largebinvect.Tpo -c -o largebinvect.lo ../../../../src/libGkArrays/src/largebinvect.cxx
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT largebinvect.lo -MD -MP -MF .deps/largebinvect.Tpo -c ../../../../src/libGkArrays/src/largebinvect.cxx -o largebinvect.o
mv -f .deps/largebinvect.Tpo .deps/largebinvect.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c -o bitvector.lo ../../../../src/libGkArrays/src/bitvector.cxx
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c ../../../../src/libGkArrays/src/bitvector.cxx -o bitvector.o
mv -f .deps/bitvector.Tpo .deps/bitvector.Plo
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT rank9b.lo -MD -MP -MF .deps/rank9b.Tpo -c -o rank9b.lo `test -f 'sux/rank9b.cpp' || echo '../../../../src/libGkArrays/src/'`sux/rank9b.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG -MT rank9b.lo -MD -MP -MF .deps/rank9b.Tpo -c ../../../../src/libGkArrays/src/sux/rank9b.cpp -o rank9b.o
../../../../src/libGkArrays/src/sux/rank9b.cpp: In member function ‘uint64_t rank9b::rank(uint64_t)’:
../../../../src/libGkArrays/src/sux/rank9b.cpp:144: warning: suggest parentheses around ‘-’ inside ‘>>’
../../../../src/libGkArrays/src/sux/rank9b.cpp: In member function ‘uint64_t rank9b::select(uint64_t)’:
../../../../src/libGkArrays/src/sux/rank9b.cpp:207: warning: suggest parentheses around ‘-’ in operand of ‘&’
mv -f .deps/rank9b.Tpo .deps/rank9b.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++   -version-info 2:0:1 -release 2.1.0 -lpthread -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/.libs> -lProgressBar   -o libGkArrays.la -rpath <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_inst/lib> gkArrays.lo solArray.lo utils.lo gkArraysBuilder.lo gkSABuilder.lo gkCFPSBuilder.lo gkIFABuilder.lo readsReader.lo largebinvect.lo bitvector.lo rank9b.lo  -lpthread -lz 
libtool: link: ar cru .libs/libGkArrays.a  gkArrays.o solArray.o utils.o gkArraysBuilder.o gkSABuilder.o gkCFPSBuilder.o gkIFABuilder.o readsReader.o largebinvect.o bitvector.o rank9b.o
libtool: link: ranlib .libs/libGkArrays.a
libtool: link: ( cd ".libs" && rm -f "libGkArrays.la" && ln -s "../libGkArrays.la" "libGkArrays.la" )
g++ -DHAVE_CONFIG_H -I. -I../../../../src/libGkArrays/src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/../../../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT buildTables.o -MD -MP -MF .deps/buildTables.Tpo -c -o buildTables.o ../../../../src/libGkArrays/src/buildTables.cpp
../../../../src/libGkArrays/src/readsReader.h:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
mv -f .deps/buildTables.Tpo .deps/buildTables.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++   -lGkArrays -lpthread -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/.libs> -lProgressBar  -o buildTables buildTables.o libGkArrays.la -lpthread -lz 
libtool: link: g++ -o buildTables buildTables.o  <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/.libs/libGkArrays.a> -L<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/.libs> ./.libs/libGkArrays.a <https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src/libProgressBar-1.2.0/libProgressBar/.libs/libProgressBar.a> -lpthread -lz
make[5]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src'>
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/src'>
Making all in tests
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/tests'>
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays/tests'>
make[4]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays'>
cp "libGkArrays.pc" "libGkArrays-2.1.0.pc"
make[4]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays'>
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src/libGkArrays'>
make[3]: Entering directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src'>
g++ -DHAVE_CONFIG_H -I. -I../../src -I../config  -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/..> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libSSA/karkkainen_bwt> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libgzstream> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src/> -I<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src/libProgressBar-1.2.0/> -Wall -ansi -funroll-loops -O4 -DNDEBUG    -MT Classifier.o -MD -MP -MF .deps/Classifier.Tpo -c -o Classifier.o ../../src/Classifier.cpp
../../src/Classifier.cpp: In member function ‘virtual std::ostream& PairedEndReadClassifier::samOutput(std::ostream&)’:
../../src/Classifier.cpp:958: error: ‘class SamLine’ has no member named ‘isMapped’
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src/readsReader.h>: At global scope:
<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/../src/libGkArrays/src/readsReader.h>:111: warning: ‘int kseq_read(kseq_t*)’ defined but not used
make[3]: *** [Classifier.o] Error 1
make[3]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build/src'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `<https://ci.inria.fr/crac/job/crac-dev/./CONFIGURE_OPTIONS=--disable-shared,label=crac-debian32/ws/crac-1.4.2/crac-1.4.2/_build'>
make: *** [distcheck] Error 1
Build step 'Execute shell' marked build as failure
TAP Reports Processing: START
Looking for TAP results report in workspace using pattern: **/*.tap 
Saving reports...
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testConsistency.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testConsistency.cpp.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testPairedEnd.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testPairedEnd.cpp.tap].
Processing '/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testVariableFixed.cpp.tap'
Parsing TAP test result [/net/www/ci/crac/jobs/crac-dev/configurations/axis-CONFIGURE_OPTIONS/--disable-shared/axis-label/crac-debian32/builds/2014-03-26_02-01-13/tap-master-files/crac-1.4.2/src/libGkArrays/tests/testVariableFixed.cpp.tap].
TAP Reports Processing: FINISH
[WARNINGS] Skipping publisher since build result is FAILURE



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