[Crac-bugs] Build failed in Jenkins: crac-distrib #51

ci-crac at inria.fr ci-crac at inria.fr
Dim 30 Mar 13:53:46 CEST 2014


See <https://ci.inria.fr/crac/job/crac-distrib/51/changes>

Changes:

[nphilippe] delete too many files

[nphilippe] remove useless Makefile.in files

[nphilippe] remove useless Makefile.in files

[nphilippe] upgrade crac version

[nphilippe] comment line [multiple.writeline(cout)]

[nphilippe] streams were initialized two times with --all option

[nphilippe] init sam_filename with --all

[nphilippe] update a should get because we consider multiple aligments when the read is a duplication

[nphilippe] consider multiple alignment when it is a duplication

[nphilippe] update unit test with new SAM norm.

[nphilippe] update unit test with new SAM norm.

[nphilippe] last SAM version consistent (almost done)

[jaudoux] [in progress] Correct paired-end flags, chimeric alignements in progress...

[nphilippe] choose to display the most occurrences rather the less

[jaudoux] Quality should not be defined unless we have a value for it

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configure: creating ./config.status
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chmod: cannot access `prerm': No such file or directory
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config.status: creating libGkArrays.pc
config.status: creating Makefile
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config.status: executing libtool commands
=== configuring in src/libProgressBar-1.2.0 (<https://ci.inria.fr/crac/job/crac-distrib/ws/src/libGkArrays/src/libProgressBar-1.2.0)>
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local'  '--disable-shared' '--enable-static' 'CPPFLAGS= -Wall -ansi -funroll-loops -O4 -DNDEBUG' 'CFLAGS=' 'CXXFLAGS=' --cache-file=/dev/null --srcdir=.
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configure: creating ./config.status
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chmod: cannot access `prerm': No such file or directory
config.status: creating prerm
config.status: creating libProgressBar.lsm
config.status: creating libProgressBar.spec
config.status: creating control
config.status: creating libProgressBar.pc
config.status: error: cannot find input file: `Makefile.in'
configure: error: ./configure failed for src/libProgressBar-1.2.0
configure: error: ./configure failed for src/libGkArrays
Build step 'Execute shell' marked build as failure
Archiving artifacts



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