[Gatb-core-support] Error compiling gatb-core

Wang, Jeremy jeremy_wang at med.unc.edu
Lun 26 Jan 19:08:23 CET 2015


Hi

I am trying to compile gatb-core on RHEL 5.6. I'm getting the following errors:


~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:548: error: type/value mismatch at argument 2 in template parameter list for ‘template<long unsigned int span> template<class ModelImpl, class T> class gatb::core::kmer::impl::Kmer<span>::ModelAbstract’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:548: error:   expected a type, got ‘gatb::core::kmer::impl::Kmer<span>::KmerDirect’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:553: error: type ‘gatb::core::kmer::impl::Kmer<span>’ is not derived from type ‘gatb::core::kmer::impl::Kmer<span>::ModelDirect’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:553: error: expected ‘;’ before ‘Kmer’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:590: error: type/value mismatch at argument 2 in template parameter list for ‘template<long unsigned int span> template<class ModelImpl, class T> class gatb::core::kmer::impl::Kmer<span>::ModelAbstract’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:590: error:   expected a type, got ‘gatb::core::kmer::impl::Kmer<span>::KmerCanonical’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:595: error: type ‘gatb::core::kmer::impl::Kmer<span>’ is not derived from type ‘gatb::core::kmer::impl::Kmer<span>::ModelCanonical’

~/gatb-core-1.0.5-Source/src/gatb/kmer/impl/Model.hpp:595: error: expected ‘;’ before ‘Kmer’

make[2]: *** [src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o] Error 1

make[1]: *** [src/CMakeFiles/gatbcore-static.dir/all] Error 2

make: *** [all] Error 2


Can anyone make a suggestion to resolve these?


Thanks,

Jeremy
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