[Paradiseo-help] [Paradiseo-users] Installing ParadisEO on Mac OS X Mountain Lion

Acampora, G. G.Acampora at tue.nl
Mar 21 Mai 12:09:30 CEST 2013


Dear Alexandre,

I thank you for your quick reply. This is the cmake output:

MacBook-Pro-di-Giovanni-Acampora:build Gianni$ sudo cmake ..
-- The C compiler identification is GNU
-- The CXX compiler identification is Clang
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [/openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-Qopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-openmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [ ]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-xopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [+Oopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-qsmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Try OpenMP CXX flag = [-mp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Failed
-- Could NOT find OpenMP (missing:  OpenMP_CXX_FLAGS) (found version ".")
-- Looking for C++ include iostream
-- Looking for C++ include iostream - found
-- Check for STD namespace
-- Check for STD namespace - found
-- Check for ANSI scope
-- Check for ANSI scope - found
-- Check for sstream
-- Check for sstream - found
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) (found version ".")
-- Could NOT find Gnuplot (missing:  GNUPLOT_EXECUTABLE) (found version ".")
-- Looking for cos in m
-- Looking for cos in m - found
-- Looking for include files math.h
-- Looking for include files math.h - found
-- Looking for include files stdio.h
-- Looking for include files stdio.h - found
-- Looking for include files stdlib.h
-- Looking for include files stdlib.h - found
-- Looking for include files string.h
-- Looking for include files string.h - found
-- Looking for include files strings.h
-- Looking for include files strings.h - found
-- Looking for include files malloc.h
-- Looking for include files malloc.h - not found.
-- Looking for include files limits.h
-- Looking for include files limits.h - found
-- Looking for include files unistd.h
-- Looking for include files unistd.h - found
-- Looking for include files stdint.h
-- Looking for include files stdint.h - found
-- Unable to generate the documentation, Doxygen package not found
-- Unable to generate the documentation, Doxygen package not found
-- Unable to generate the documentation, Doxygen package not found
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/Gianni/Paradiseo/ParadisEO-2.0/build


and this is the output from make:


MacBook-Pro-di-Giovanni-Acampora:build Gianni$ sudo make
Scanning dependencies of target eo
[  2%] Building CXX object eo/src/CMakeFiles/eo.dir/eoFunctorStore.cpp.o
[  4%] Building CXX object eo/src/CMakeFiles/eo.dir/eoPersistent.cpp.o
[  6%] Building CXX object eo/src/CMakeFiles/eo.dir/eoPrintable.cpp.o
[  8%] Building CXX object eo/src/CMakeFiles/eo.dir/eoCtrlCContinue.cpp.o
[ 10%] Building CXX object eo/src/CMakeFiles/eo.dir/eoScalarFitnessAssembled.cpp.o
[ 12%] Building CXX object eo/src/CMakeFiles/eo.dir/eoSIGContinue.cpp.o
Linking CXX static library ../lib/libeo.a
[ 12%] Built target eo
Scanning dependencies of target cma
[ 14%] Building CXX object eo/src/es/CMakeFiles/cma.dir/eig.cpp.o
[ 16%] Building CXX object eo/src/es/CMakeFiles/cma.dir/CMAState.cpp.o
[ 18%] Building CXX object eo/src/es/CMakeFiles/cma.dir/CMAParams.cpp.o
Linking CXX static library ../../lib/libcma.a
[ 18%] Built target cma
Scanning dependencies of target es
[ 20%] Building CXX object eo/src/es/CMakeFiles/es.dir/make_algo_scalar_es.cpp.o
In file included from /Users/Gianni/Paradiseo/ParadisEO-2.0/eo/src/es/make_algo_scalar_es.cpp:44:
In file included from /Users/Gianni/Paradiseo/ParadisEO-2.0/eo/src/do/make_algo_scalar.h:58:
In file included from /Users/Gianni/Paradiseo/ParadisEO-2.0/eo/src/eoEasyEA.h:30:
/Users/Gianni/Paradiseo/ParadisEO-2.0/eo/src/apply.h:34:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^
1 error generated.
make[2]: *** [eo/src/es/CMakeFiles/es.dir/make_algo_scalar_es.cpp.o] Error 1
make[1]: *** [eo/src/es/CMakeFiles/es.dir/all] Error 2
make: *** [all] Error 2





Thank you very much.

Sincerely,
Gianni




Il giorno 21/mag/2013, alle ore 11:55, Alexandre QUEMY <alexandre.quemy at gmail.com<mailto:alexandre.quemy at gmail.com>> ha scritto:

Hi,

Would it be possible to have a log of you attempt with CMake please (including CMake commands), please ?

Regards,

Alexandre


2013/5/21 Acampora, G. <G.Acampora at tue.nl<mailto:G.Acampora at tue.nl>>
Dear Community,

Please, can you help me to install ParadisEO on on Mac OS X Mountain Lion and create XCode Projects. I tried to use the .DMG file but it does not seem work. I also tried to use cmake and make for compiling ParadisEO sources but it returns a compiling error.

Thank you very much.

Gianni
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